biomcp

by genomoncology · Rust · ★ 532

BioMCP: Biomedical Model Context Protocol

#ai#bioinformatics#clinical-trials#genomics#llm#mcp#mcp-server#medical#model-context-protocol#pubmed#pubmed-central

Install

cargo install --git https://github.com/genomoncology/biomcp.git

Auto-generated from the repo's primary language — check the repo's own README for its exact install instructions.

Claude Desktop config

A starting point for your claude_desktop_config.json (auto-generated — the repo's README may specify a published package name or required env vars):

{
  "mcpServers": {
    "biomcp": {
      "command": "npx",
      "args": [
        "-y",
        "github:genomoncology/biomcp"
      ]
    }
  }
}

From the README

One binary. One grammar. Evidence from the biomedical sources you already trust. BioMCP cuts through the usual biomedical data maze: one query reaches the sources that normally live behind different APIs, identifiers, and search habits. Researchers, clinicians, and agents use the same command grammar to search, focus, and pivot without rebuilding the workflow for each source. You get compact, evidence-oriented results across live public data plus local study analytics. - **Search the literature:** fans out across PubTator3 and Europe PMC, deduplicates PMID/PMCID/DOI identifiers, and can a…

Read full README on GitHub →

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